Major Publication

Indonesia dalam Arus Sejarah: Jil id III, Kedatangan dan Peradaban Islam [Indonesia in the Stream of History: Volume III, The Coming and Civilization of Islam] (editor) (Indonesian), Jakarta: Ministry of Education and Culture & Ichtiar Baru-Van Hoeve, 2012.

Varieties of Religious Authority: Changes and Challenges in 20th Century Indonesian Islam (co-editor), Singapore: ISEAS, 2010.

Islam beyond Conflict: Indonesian Islam and Western Political Theory (contributing editor), London: Ashgate, 2008.

Ensiklopedi Tasawuf [Encyclopedia of Islam] (editor) (Indonesian), 3 volumes, Bandung: Angkasa, 2008.

Indonesia, Islam and Democracy: Dynamics in a Global Context, U.S.A.: Solstice Publishing, 2006.

Islam in the Indonesian World: An Account of Institutional Formation, Bandung: Mizan Pustaka, 2006.

Japan, Islam, the Muslim World and Indonesia: Past and Present, Jakarta: The Japan Foundation, 2005.

The Origins of Islamic Reformism in Southeast Asia: Networks of Malay-Indonesian and Middle Eastern 'Ulama' in the seventeenth and eighteenth centuries, Crows Nest, Australia: Asian Studies Association of Australia and Allen & Unwin; Honolulu: University of Hawai’i Press; Leiden: KITLV Press, 2004.

Sharia’ and Politics in Indonesia (co-editor), Singapore: ISEAS, 2003.

Shibkah al-Ulama [Networks of the Ulama-Muslim Scholars] (Arabic), Jakarta: Kementerian Agama RI, 1996.

Perspektif Islam di Asia Tenggara [Perspectives of Islam in Southeast Asia] (editor) (Indonesian), Jakarta: Yayasan Obor Indonesia, 1985